The Court can expect a slew of religious freedom cases over the next couple sessions. I don't think that the Court is in the mood nor the position to say, explicitly, that a bed-and-breakfast ran by Southern Baptists has to provide accommodation for a gay couple, or that a religious institution of higher learning must provide married student housing to homosexuals. The Court has walked itself into a very tight corner, and I think it may actually end-up making things worse-off for LGBT Americans.
I see what you're saying and I definitely agree with most of this, but the decision can only make them worse off if they choose to start a fight with churches/religious institutions/biz.
And all indications are some already have.
Yes, I think that anyone would have to concede that there are LGBTs willing to pick this fight. As uncomfortable as it is to admit, there are elements of the pro-LGBT community in the United States that see organized religion and religious expression an "enemy" to their cause.
LGBTs have won in our courthouses, and I think there are plenty out there willing and
wanting to take this battle into churches and other religious institutions. There's some sort of masturbatory pleasure that the "ACLU-Left" gets from degrading organized religion despite the 1st Amendment.