Awesome post, since after all it is the height of College Ball season, and certainly College Football, and certainly if nothing else this is a subject that should transcend whatever political squabbles and disagreements we have on Atlas regarding politics...
Although I was a bit of a late comer to College Football and didn't become a fan until my mid '20s, some 20 years back, started to develop "favorite teams" in just about every conference over the years...
Still your list is missing a few Division I-A conference, and also wraps up splits within Conferences into one list (Such as PAC-12/ SEC/ ACC, etc...)
My List:
PAC 12 North--- Oregon State University
PAC 12 South--- UCLA
Big 12: University of Texas
Big Ten East: Ohio State University
Big Ten West: University of Iowa
Mountain State East: Boise State University
Mountain State West: San Diego State University
AAC- East: University of Cincinnati
AAC-West: US Naval Acadamy
AAC-Atlantic: Boston College
AAC-Coastal- University of Virginia
Conf USA East---
Conf USA West- Rice University
FBS Independents- University of Notre Dame
Mid American East- Ohio University
Mid American West- Central Michigan University
SEC-East: University of Florida
SEC-West: University of Alabama
Sun Belt: Appalachian State University
Anyone interested in checking out the results thus far from I-A Football communities, contributing to the project, analyzing and discussing the actual results from the '16 GE, here's a link to a thread that I have been developing over the past month....
https://uselectionatlas.org/FORUM/index.php?topic=273504.0
